Species used to derive Hidden Markov model parameters

To estimate the parameter of Hidden Markov model, there are total 357 Bacteria and Archaea species used in our training set.
In order to build a mixture dual model, we further devided them into two sets:
- 38 Archaea species(a) and 319 Bacteria species(b);
- 316 Mesophilic species(m) and 41 Thermophilic species(t), as described in the text.

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38 matching your search criteria
accession species domain size GCcontent optCategory optString
NC_007681Methanosphaera_stadtmanaeArchaea176740327.6Mesophilic36-40C
NC_009635Methanococcus_aeolicus_Nankai-3Archaea156950030.0Mesophilic42C
NC_009515Methanobrevibacter_smithii_ATCC_35061Archaea185316031.0Mesophilic37-40C
NC_009634Methanococcus_vannielii_SBArchaea172004831.3Mesophilic30C
NC_000909Methanococcus_jannaschiiArchaea166497031.4Hyperthermophilic85C
NC_003106Sulfolobus_tokodaiiArchaea269475632.8Hyperthermophilic80C
NC_005791Methanococcus_maripaludis_S2Archaea166113733.1Mesophilic35-40C
NC_009033Staphylothermus_marinus_F1Archaea157048535.7Hyperthermophilic92C
NC_002754Sulfolobus_solfataricusArchaea299224535.8Hyperthermophilic85C
NC_005877Picrophilus_torridus_DSM_9790Archaea154589536.0Thermophilic60C
NC_007181Sulfolobus_acidocaldarius_DSM_639Archaea222595936.7Thermophilic70-75C
NC_007355Methanosarcina_barkeri_fusaroArchaea483740839.3Mesophilic35-40C
NC_002689Thermoplasma_volcaniumArchaea158480439.9Thermophilic60C
NC_007955Methanococcoides_burtonii_DSM_6242Archaea257503240.8Mesophilic23.4C
NC_003413Pyrococcus_furiosusArchaea190825640.8Hyperthermophilic100C
NC_003901Methanosarcina_mazeiArchaea409634541.5Mesophilic30-40C
NC_000961Pyrococcus_horikoshiiArchaea173850541.9Hyperthermophilic98C
NC_003552Methanosarcina_acetivoransArchaea575149242.7Mesophilic35-40C
NC_009954Caldivirga_maquilingensis_IC-167Archaea207756743.1Hyperthermophilic85C
NC_000868Pyrococcus_abyssiArchaea176511844.7Hyperthermophilic103C
NC_007796Methanospirillum_hungatei_JF-1Archaea354473845.1Mesophilic37C
NC_002578Thermoplasma_acidophilumArchaea156490646.0Thermophilic59C
NC_009440Metallosphaera_sedula_DSM_5348Archaea219151746.2Thermophilic70C
NC_000917Archaeoglobus_fulgidusArchaea217840048.6Hyperthermophilic83C
NC_000916Methanobacterium_thermoautotrophicumArchaea175137749.5Thermophilic65-70C
NC_008701Pyrobaculum_islandicum_DSM_4184Archaea182640249.6Thermophilic100C
NC_008942Methanocorpusculum_labreanum_ZArchaea180496250.0Mesophilic37C
NC_003364Pyrobaculum_aerophilumArchaea222243051.4Hyperthermophilic100C
NC_006624Thermococcus_kodakaraensis_KOD1Archaea208873752.0Hyperthermophilic85C
NC_008818Hyperthermus_butylicusArchaea166716353.7Hyperthermophilic95-106C
NC_009712Candidatus_Methanoregula_boonei_6A8Archaea254294354.5Mesophilic37C
NC_000854Aeropyrum_pernixArchaea166969656.3Hyperthermophilic90-95C
NC_009073Pyrobaculum_calidifontis_JCM_11548Archaea200931357.2Hyperthermophilic90-95C
NC_008698Thermofilum_pendens_Hrk_5Archaea178188957.7Hyperthermophilic88C
NC_003551Methanopyrus_kandleriArchaea169496961.2Hyperthermophilic98C
NC_009051Methanoculleus_marisnigri_JR1Archaea247810162.1Mesophilic21-25C
NC_006396Haloarcula_marismortui_ATCC_43049Archaea313172462.4Mesophilic40-50C
NC_002607Halobacterium_spArchaea201423967.9Mesophilic42C

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