Species used to derive Hidden Markov model parameters

To estimate the parameter of Hidden Markov model, there are total 357 Bacteria and Archaea species used in our training set.
In order to build a mixture dual model, we further devided them into two sets:
- 38 Archaea species(a) and 319 Bacteria species(b);
- 316 Mesophilic species(m) and 41 Thermophilic species(t), as described in the text.

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41 matching your search criteria
accession species domain size GCcontent optCategory optString
NC_009616Thermosipho_melanesiensis_BI429Bacteria191523831.4Thermophilic70C
NC_000909Methanococcus_jannaschiiArchaea166497031.4Hyperthermophilic85C
NC_003106Sulfolobus_tokodaiiArchaea269475632.8Hyperthermophilic80C
NC_009718Fervidobacterium_nodosum_Rt17-B1Bacteria194894135.0Thermophilic70C
NC_009033Staphylothermus_marinus_F1Archaea157048535.7Hyperthermophilic92C
NC_002754Sulfolobus_solfataricusArchaea299224535.8Hyperthermophilic85C
NC_005877Picrophilus_torridus_DSM_9790Archaea154589536.0Thermophilic60C
NC_007181Sulfolobus_acidocaldarius_DSM_639Archaea222595936.7Thermophilic70-75C
NC_003869Thermoanaerobacter_tengcongensisBacteria268944537.6Hyperthermophilic75C
NC_002689Thermoplasma_volcaniumArchaea158480439.9Thermophilic60C
NC_003413Pyrococcus_furiosusArchaea190825640.8Hyperthermophilic100C
NC_000961Pyrococcus_horikoshiiArchaea173850541.9Hyperthermophilic98C
NC_007503Carboxydothermus_hydrogenoformans_Z-2901Bacteria240152042.0Hyperthermophilic78C
NC_009954Caldivirga_maquilingensis_IC-167Archaea207756743.1Hyperthermophilic85C
NC_000918Aquifex_aeolicusBacteria155133543.5Hyperthermophilic96C
NC_000868Pyrococcus_abyssiArchaea176511844.7Hyperthermophilic103C
NC_002578Thermoplasma_acidophilumArchaea156490646.0Thermophilic59C
NC_009486Thermotoga_petrophila_RKU-1Bacteria182351146.1Hyperthermophilic80C
NC_009440Metallosphaera_sedula_DSM_5348Archaea219151746.2Thermophilic70C
NC_000853Thermotoga_maritimaBacteria186072546.2Hyperthermophilic80C
NC_000917Archaeoglobus_fulgidusArchaea217840048.6Hyperthermophilic83C
NC_009328Geobacillus_thermodenitrificans_NG80-2Bacteria355031949.0Thermophilic65C
NC_000916Methanobacterium_thermoautotrophicumArchaea175137749.5Thermophilic65-70C
NC_008701Pyrobaculum_islandicum_DSM_4184Archaea182640249.6Thermophilic100C
NC_003364Pyrobaculum_aerophilumArchaea222243051.4Hyperthermophilic100C
NC_006624Thermococcus_kodakaraensis_KOD1Archaea208873752.0Hyperthermophilic85C
NC_009454Pelotomaculum_thermopropionicum_SIBacteria302537553.0Thermophilic55C
NC_008818Hyperthermus_butylicusArchaea166716353.7Hyperthermophilic95-106C
NC_004113Thermosynechococcus_elongatusBacteria259385753.9Thermophilic55C
NC_007644Moorella_thermoacetica_ATCC_39073Bacteria262878455.8Thermophilic58C
NC_000854Aeropyrum_pernixArchaea166969656.3Hyperthermophilic90-95C
NC_002932Chlorobium_tepidum_TLSBacteria215494656.5Thermophilic48C
NC_009073Pyrobaculum_calidifontis_JCM_11548Archaea200931357.2Hyperthermophilic90-95C
NC_008698Thermofilum_pendens_Hrk_5Archaea178188957.7Hyperthermophilic88C
NC_009767Roseiflexus_castenholzii_DSM_13941Bacteria572329860.7Thermophilic50C
NC_003551Methanopyrus_kandleriArchaea169496961.2Hyperthermophilic98C
NC_008578Acidothermus_cellulolyticus_11BBacteria244354066.9Thermophilic58C
NC_007333Thermobifida_fusca_YXBacteria364224967.5Thermophilic50-55C
NC_006177Symbiobacterium_thermophilum_IAM14863Bacteria356613568.7Thermophilic60C
NC_005835Thermus_thermophilus_HB27Bacteria189487769.4Thermophilic68C
NC_008148Rubrobacter_xylanophilus_DSM_9941Bacteria322574870.5Thermophilic60C

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